Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC187A0A096LP49 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC187A0A096LP49 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC187A0A096LP49 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC187A0A096LP49 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC187A0A096LP49 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 AP002414.1-201ENST00000391405 1147 ntBASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 AC004877.2-201ENST00000623941 599 ntBASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 AC010507.1-201ENST00000633895 436 ntBASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 BCAR1-209ENST00000546196 1340 ntBASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC187A0A096LP49 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 TNXA-203ENST00000507684 2038 ntBASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 MIR3197-201ENST00000582241 73 ntBASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 AC097637.2-201ENST00000624096 1997 ntBASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CCDC187A0A096LP49 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 PTCHD3P3-201ENST00000403073 906 ntBASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 DDX43P3-201ENST00000441064 443 ntBASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 ACTG1P14-201ENST00000446382 1122 ntBASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC187A0A096LP49 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms