Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 AC005521.1-201ENST00000393351 872 ntBASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 KRT18P38-201ENST00000449496 1282 ntBASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 AL359075.1-203ENST00000462729 1002 ntBASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 AP003733.1-201ENST00000491725 852 ntBASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 AC073508.3-201ENST00000619697 1419 ntBASIC16.02■□□□□ 0.15
TRAV27A0A087WT01 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.01■□□□□ 0.15
TRAV27A0A087WT01 AL353692.3-201ENST00000407031 1396 ntBASIC16■□□□□ 0.15
TRAV27A0A087WT01 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 DDT-203ENST00000403754 569 ntTSL 3 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 DDT-206ENST00000430101 573 ntTSL 2 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 GXYLT1P4-201ENST00000613576 1192 ntBASIC16■□□□□ 0.15
TRAV27A0A087WT01 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV27A0A087WT01 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16■□□□□ 0.15
TRAV27A0A087WT01 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 BX276092.7-203ENST00000637198 1536 ntBASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 OR6D1P-203ENST00000641209 4860 ntBASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV27A0A087WT01 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms