Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHGA1Q9Y5H4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 IGLL3P-201ENST00000412472 434 ntBASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 AL031432.2-201ENST00000566714 459 ntBASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 AL928711.1-201ENST00000570165 459 ntBASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 AC106028.4-201ENST00000614509 607 ntBASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 AC004877.2-201ENST00000623941 599 ntBASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHGA1Q9Y5H4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 AC093010.1-201ENST00000473625 1624 ntBASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 AC148477.5-201ENST00000625164 1645 ntBASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TSEN15P1-201ENST00000423257 515 ntBASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 RHOQP3-201ENST00000437982 621 ntBASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 AC027612.4-201ENST00000605371 583 ntBASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 ESPNP-201ENST00000270691 2015 ntBASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHGA1Q9Y5H4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.89■□□□□ 0.3
PCDHGA1Q9Y5H4 SIRPAP1-201ENST00000448467 1770 ntBASIC16.89■□□□□ 0.3
PCDHGA1Q9Y5H4 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PCDHGA1Q9Y5H4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
PCDHGA1Q9Y5H4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.89■□□□□ 0.3
PCDHGA1Q9Y5H4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
PCDHGA1Q9Y5H4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
PCDHGA1Q9Y5H4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDHGA1Q9Y5H4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDHGA1Q9Y5H4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms