Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC112482.1-201ENST00000492080 688 ntBASIC18.13■□□□□ 0.49
TDP1Q9NUW8 RPS15P9-201ENST00000494093 319 ntBASIC18.13■□□□□ 0.49
TDP1Q9NUW8 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TDP1Q9NUW8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 MYCLP1-201ENST00000372451 1075 ntBASIC18.12■□□□□ 0.49
TDP1Q9NUW8 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 AC108073.2-201ENST00000464002 357 ntBASIC18.12■□□□□ 0.49
TDP1Q9NUW8 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 AC008667.4-201ENST00000607370 168 ntBASIC18.12■□□□□ 0.49
TDP1Q9NUW8 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 KRT18P55-202ENST00000578578 1546 ntBASIC18.12■□□□□ 0.49
TDP1Q9NUW8 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TDP1Q9NUW8 AC097637.2-201ENST00000624096 1997 ntBASIC18.11■□□□□ 0.49
TDP1Q9NUW8 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 KRT18P2-201ENST00000447938 1258 ntBASIC18.11■□□□□ 0.49
TDP1Q9NUW8 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 IGHV3-65-201ENST00000523210 341 ntBASIC18.11■□□□□ 0.49
TDP1Q9NUW8 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 MTDHP5-201ENST00000598980 586 ntBASIC18.11■□□□□ 0.49
TDP1Q9NUW8 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 FLJ13224-201ENST00000313737 1514 ntBASIC18.11■□□□□ 0.49
TDP1Q9NUW8 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.11■□□□□ 0.49
TDP1Q9NUW8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 AC004408.2-201ENST00000623613 2777 ntBASIC18.1■□□□□ 0.49
TDP1Q9NUW8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 MIR4751-201ENST00000578027 74 ntBASIC18.1■□□□□ 0.49
TDP1Q9NUW8 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.1■□□□□ 0.49
TDP1Q9NUW8 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms