Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.18■□□□□ 0.34
CFAP54Q96N23 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.18■□□□□ 0.34
CFAP54Q96N23 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.18■□□□□ 0.34
CFAP54Q96N23 KRT8P48-201ENST00000515599 1220 ntBASIC17.18■□□□□ 0.34
CFAP54Q96N23 AC106886.1-201ENST00000568660 600 ntBASIC17.18■□□□□ 0.34
CFAP54Q96N23 FEM1AP3-201ENST00000403722 1741 ntBASIC17.18■□□□□ 0.34
CFAP54Q96N23 AL161938.1-201ENST00000569833 2180 ntBASIC17.18■□□□□ 0.34
CFAP54Q96N23 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.18■□□□□ 0.34
CFAP54Q96N23 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.18■□□□□ 0.34
CFAP54Q96N23 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 KRT17P8-201ENST00000540749 863 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 AL805961.1-202ENST00000641562 540 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 AC138969.3-201ENST00000546612 1459 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 AC138932.2-201ENST00000548268 1459 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 AC126755.4-201ENST00000549796 1459 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 AC112698.1-201ENST00000510299 916 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 AC003101.2-201ENST00000612557 442 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 ELK2AP-201ENST00000392510 1007 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 RNA5SP423-201ENST00000517127 109 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.17■□□□□ 0.34
CFAP54Q96N23 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CFAP54Q96N23 SDHAP2-201ENST00000455183 2001 ntBASIC17.17■□□□□ 0.34
CFAP54Q96N23 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 SLC25A24-204ENST00000569674 2357 ntBASIC17.16■□□□□ 0.34
CFAP54Q96N23 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 KRT18P41-201ENST00000518924 1277 ntBASIC17.16■□□□□ 0.34
CFAP54Q96N23 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 AC009118.2-201ENST00000613275 655 ntBASIC17.16■□□□□ 0.34
CFAP54Q96N23 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.16■□□□□ 0.34
CFAP54Q96N23 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms