Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.8■□□□□ 0.92
BRF1Q92994 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BRF1Q92994 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.8■□□□□ 0.92
BRF1Q92994 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BRF1Q92994 CROCCP2-202ENST00000412962 2773 ntBASIC20.8■□□□□ 0.92
BRF1Q92994 SIRPAP1-201ENST00000448467 1770 ntBASIC20.8■□□□□ 0.92
BRF1Q92994 KRT18P1-202ENST00000452408 1331 ntBASIC20.79■□□□□ 0.92
BRF1Q92994 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
BRF1Q92994 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
BRF1Q92994 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 AC005104.2-201ENST00000427818 678 ntBASIC20.79■□□□□ 0.92
BRF1Q92994 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.79■□□□□ 0.92
BRF1Q92994 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.79■□□□□ 0.92
BRF1Q92994 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.79■□□□□ 0.92
BRF1Q92994 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
BRF1Q92994 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
BRF1Q92994 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.79■□□□□ 0.92
BRF1Q92994 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.79■□□□□ 0.92
BRF1Q92994 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
BRF1Q92994 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRF1Q92994 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.79■□□□□ 0.92
BRF1Q92994 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
BRF1Q92994 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.78■□□□□ 0.92
BRF1Q92994 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
BRF1Q92994 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.78■□□□□ 0.92
BRF1Q92994 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.78■□□□□ 0.92
BRF1Q92994 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
BRF1Q92994 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
BRF1Q92994 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.78■□□□□ 0.92
BRF1Q92994 COX5BP2-201ENST00000392354 334 ntBASIC20.78■□□□□ 0.92
BRF1Q92994 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.78■□□□□ 0.92
BRF1Q92994 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
BRF1Q92994 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
BRF1Q92994 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.78■□□□□ 0.92
BRF1Q92994 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
BRF1Q92994 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.78■□□□□ 0.92
BRF1Q92994 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
BRF1Q92994 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
BRF1Q92994 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
BRF1Q92994 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.78■□□□□ 0.92
BRF1Q92994 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
BRF1Q92994 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
BRF1Q92994 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.77■□□□□ 0.92
BRF1Q92994 AC012313.1-201ENST00000593393 3059 ntBASIC20.77■□□□□ 0.92
BRF1Q92994 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BRF1Q92994 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRF1Q92994 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.77■□□□□ 0.92
BRF1Q92994 AC246785.2-201ENST00000432512 513 ntBASIC20.77■□□□□ 0.92
BRF1Q92994 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRF1Q92994 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.77■□□□□ 0.92
BRF1Q92994 TPSP2-201ENST00000561760 610 ntBASIC20.77■□□□□ 0.92
BRF1Q92994 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.77■□□□□ 0.92
BRF1Q92994 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.77■□□□□ 0.92
BRF1Q92994 AP002414.4-201ENST00000589764 1148 ntBASIC20.77■□□□□ 0.92
BRF1Q92994 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRF1Q92994 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BRF1Q92994 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRF1Q92994 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
BRF1Q92994 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRF1Q92994 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRF1Q92994 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
BRF1Q92994 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.77■□□□□ 0.91
BRF1Q92994 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
BRF1Q92994 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.77■□□□□ 0.91
BRF1Q92994 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
BRF1Q92994 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
BRF1Q92994 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
BRF1Q92994 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
BRF1Q92994 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
BRF1Q92994 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
BRF1Q92994 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
BRF1Q92994 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BRF1Q92994 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
BRF1Q92994 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.76■□□□□ 0.91
BRF1Q92994 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
BRF1Q92994 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BRF1Q92994 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRF1Q92994 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.76■□□□□ 0.91
BRF1Q92994 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.76■□□□□ 0.91
BRF1Q92994 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
BRF1Q92994 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.76■□□□□ 0.91
BRF1Q92994 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
BRF1Q92994 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.76■□□□□ 0.91
BRF1Q92994 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRF1Q92994 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRF1Q92994 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRF1Q92994 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRF1Q92994 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
BRF1Q92994 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BRF1Q92994 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms