Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4AQ8WYN0 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 STARP1-201ENST00000397973 869 ntBASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 YBX1P2-201ENST00000489612 999 ntBASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ATG4AQ8WYN0 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 TERF1P1-201ENST00000311003 1181 ntBASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 IGHGP-201ENST00000390555 1178 ntBASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 AC133561.5-201ENST00000635547 218 ntBASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 AL031432.5-201ENST00000641059 760 ntBASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ATG4AQ8WYN0 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms