Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.21■□□□□ 0.83
SH3RF1Q7Z6J0 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 MED15P5-201ENST00000423150 992 ntBASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 GPX1P2-201ENST00000429271 606 ntBASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 AC112482.1-201ENST00000492080 688 ntBASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 AC113404.2-201ENST00000507884 177 ntBASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 AC034105.1-201ENST00000563488 319 ntBASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 AC005336.2-201ENST00000593183 939 ntBASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
SH3RF1Q7Z6J0 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 TP73-AS1-210ENST00000637775 1455 ntBASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 FAM197Y3-203ENST00000618346 717 ntBASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 PP12613-201ENST00000424958 2230 ntBASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SH3RF1Q7Z6J0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 RPS2P28-201ENST00000314255 741 ntBASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 RBM17P3-201ENST00000417687 1192 ntBASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms