Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 TOB2P1-201ENST00000469761 992 ntBASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 AC092329.2-201ENST00000598402 547 ntBASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 BX276092.7-203ENST00000637198 1536 ntBASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 AC233702.3-201ENST00000578656 1387 ntBASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNE3Q6ZMZ3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 NPAP1P7-201ENST00000613027 823 ntBASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 LINC00896-202ENST00000609602 2128 ntBASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SYNE3Q6ZMZ3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 AC125634.1-201ENST00000438758 1403 ntBASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 AC092119.3-201ENST00000612618 583 ntBASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE3Q6ZMZ3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 MINOS1P3-201ENST00000457048 203 ntBASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 AP000867.3-201ENST00000524675 377 ntBASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 MIR3180-1-201ENST00000580374 94 ntBASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 MIR3180-3-201ENST00000584616 94 ntBASIC20.79■□□□□ 0.92
SYNE3Q6ZMZ3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms