Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 SDHAP2-201ENST00000455183 2001 ntBASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 SIRPAP1-201ENST00000448467 1770 ntBASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 TP73-AS1-210ENST00000637775 1455 ntBASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 AL024508.2-201ENST00000607749 1894 ntBASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.5■□□□□ 0.87
CCDC144BQ3MJ40 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 AC117500.6-201ENST00000624871 588 ntBASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC144BQ3MJ40 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 AC243591.1-201ENST00000452967 1364 ntBASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 MYLKP1-201ENST00000509077 1580 ntBASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms