Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.44■□□□□ 0.86
SF3A1Q15459 KRT8P47-201ENST00000604727 1398 ntBASIC20.44■□□□□ 0.86
SF3A1Q15459 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.44■□□□□ 0.86
SF3A1Q15459 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
SF3A1Q15459 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.43■□□□□ 0.86
SF3A1Q15459 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.43■□□□□ 0.86
SF3A1Q15459 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SF3A1Q15459 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SF3A1Q15459 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SF3A1Q15459 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SF3A1Q15459 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SF3A1Q15459 FAM8A6P-201ENST00000407496 1135 ntBASIC20.43■□□□□ 0.86
SF3A1Q15459 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.43■□□□□ 0.86
SF3A1Q15459 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.43■□□□□ 0.86
SF3A1Q15459 AL359075.1-203ENST00000462729 1002 ntBASIC20.43■□□□□ 0.86
SF3A1Q15459 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SF3A1Q15459 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SF3A1Q15459 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SF3A1Q15459 LINC01023-201ENST00000606054 436 ntBASIC20.43■□□□□ 0.86
SF3A1Q15459 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.43■□□□□ 0.86
SF3A1Q15459 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.43■□□□□ 0.86
SF3A1Q15459 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SF3A1Q15459 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SF3A1Q15459 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SF3A1Q15459 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SF3A1Q15459 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.42■□□□□ 0.86
SF3A1Q15459 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SF3A1Q15459 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SF3A1Q15459 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 HBZP1-201ENST00000354915 429 ntBASIC20.42■□□□□ 0.86
SF3A1Q15459 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SF3A1Q15459 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
SF3A1Q15459 AK4P3-201ENST00000418260 669 ntBASIC20.42■□□□□ 0.86
SF3A1Q15459 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SF3A1Q15459 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.42■□□□□ 0.86
SF3A1Q15459 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.42■□□□□ 0.86
SF3A1Q15459 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.42■□□□□ 0.86
SF3A1Q15459 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
SF3A1Q15459 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SF3A1Q15459 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.42■□□□□ 0.86
SF3A1Q15459 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SF3A1Q15459 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.41■□□□□ 0.86
SF3A1Q15459 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SF3A1Q15459 MIR662-201ENST00000384847 95 ntBASIC20.41■□□□□ 0.86
SF3A1Q15459 AC112907.2-201ENST00000448639 330 ntBASIC20.41■□□□□ 0.86
SF3A1Q15459 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.41■□□□□ 0.86
SF3A1Q15459 HYMAI.1-201ENST00000620949 238 ntBASIC20.41■□□□□ 0.86
SF3A1Q15459 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.41■□□□□ 0.86
SF3A1Q15459 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SF3A1Q15459 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.41■□□□□ 0.86
SF3A1Q15459 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.41■□□□□ 0.86
SF3A1Q15459 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
SF3A1Q15459 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SF3A1Q15459 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SF3A1Q15459 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
SF3A1Q15459 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SF3A1Q15459 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SF3A1Q15459 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SF3A1Q15459 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SF3A1Q15459 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SF3A1Q15459 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20.41■□□□□ 0.86
SF3A1Q15459 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.41■□□□□ 0.86
SF3A1Q15459 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.4■□□□□ 0.86
SF3A1Q15459 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.4■□□□□ 0.86
SF3A1Q15459 IGHGP-201ENST00000390555 1178 ntBASIC20.4■□□□□ 0.86
SF3A1Q15459 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.4■□□□□ 0.86
SF3A1Q15459 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.4■□□□□ 0.86
SF3A1Q15459 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SF3A1Q15459 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.4■□□□□ 0.86
SF3A1Q15459 AC104076.2-201ENST00000448912 469 ntBASIC20.4■□□□□ 0.86
SF3A1Q15459 HOMER2P1-201ENST00000455653 964 ntBASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms