Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC00167-201ENST00000530583 1419 ntBASIC16.65■□□□□ 0.26
SOX3P41225 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.65■□□□□ 0.26
SOX3P41225 AC084018.2-201ENST00000613093 2607 ntBASIC16.65■□□□□ 0.26
SOX3P41225 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.65■□□□□ 0.26
SOX3P41225 SLC25A6P5-201ENST00000435663 894 ntBASIC16.65■□□□□ 0.26
SOX3P41225 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.65■□□□□ 0.26
SOX3P41225 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX3P41225 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.65■□□□□ 0.26
SOX3P41225 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX3P41225 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SOX3P41225 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.65■□□□□ 0.26
SOX3P41225 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.65■□□□□ 0.26
SOX3P41225 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SOX3P41225 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SOX3P41225 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX3P41225 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX3P41225 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SOX3P41225 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SOX3P41225 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
SOX3P41225 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SOX3P41225 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX3P41225 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX3P41225 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX3P41225 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
SOX3P41225 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 VENTXP7-201ENST00000475503 772 ntBASIC16.64■□□□□ 0.25
SOX3P41225 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.64■□□□□ 0.25
SOX3P41225 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.64■□□□□ 0.25
SOX3P41225 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SOX3P41225 KRT126P-201ENST00000549467 1181 ntBASIC16.64■□□□□ 0.25
SOX3P41225 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.64■□□□□ 0.25
SOX3P41225 AC074051.2-201ENST00000565115 352 ntBASIC16.64■□□□□ 0.25
SOX3P41225 AC012615.1-201ENST00000565797 1299 ntBASIC16.64■□□□□ 0.25
SOX3P41225 AC011840.4-201ENST00000578471 627 ntBASIC16.64■□□□□ 0.25
SOX3P41225 Z69720.1-201ENST00000601483 472 ntBASIC16.64■□□□□ 0.25
SOX3P41225 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX3P41225 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX3P41225 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.64■□□□□ 0.25
SOX3P41225 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SOX3P41225 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 AC124067.4-201ENST00000519691 2379 ntBASIC16.64■□□□□ 0.25
SOX3P41225 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX3P41225 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX3P41225 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
SOX3P41225 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
SOX3P41225 OR6D1P-202ENST00000641007 5290 ntBASIC16.63■□□□□ 0.25
SOX3P41225 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
SOX3P41225 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX3P41225 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 AL845331.1-201ENST00000424978 1190 ntBASIC16.63■□□□□ 0.25
SOX3P41225 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 AC091607.1-201ENST00000490318 1060 ntBASIC16.63■□□□□ 0.25
SOX3P41225 AC104819.1-201ENST00000504587 486 ntBASIC16.63■□□□□ 0.25
SOX3P41225 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.63■□□□□ 0.25
SOX3P41225 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.63■□□□□ 0.25
SOX3P41225 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms