Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC21.29■■□□□ 1
BRCA1P38398 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC21.29■■□□□ 1
BRCA1P38398 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
BRCA1P38398 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC21.29■■□□□ 1
BRCA1P38398 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC21.29■■□□□ 1
BRCA1P38398 IFT20-216ENST00000588477 774 ntTSL 5 BASIC21.29■■□□□ 1
BRCA1P38398 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.29■■□□□ 1
BRCA1P38398 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.29■■□□□ 1
BRCA1P38398 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
BRCA1P38398 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.29■■□□□ 1
BRCA1P38398 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.29■■□□□ 1
BRCA1P38398 AC100757.3-201ENST00000622361 1406 ntBASIC21.29■■□□□ 1
BRCA1P38398 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
BRCA1P38398 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.28■■□□□ 1
BRCA1P38398 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.28■■□□□ 1
BRCA1P38398 IGHV3-52-201ENST00000519770 353 ntBASIC21.28■■□□□ 1
BRCA1P38398 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC21.28■■□□□ 1
BRCA1P38398 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.28■■□□□ 1
BRCA1P38398 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.28■■□□□ 1
BRCA1P38398 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC21.28■■□□□ 1
BRCA1P38398 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC21.28■■□□□ 1
BRCA1P38398 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
BRCA1P38398 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.28■■□□□ 1
BRCA1P38398 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BRCA1P38398 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRCA1P38398 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.27■■□□□ 1
BRCA1P38398 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRCA1P38398 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRCA1P38398 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
BRCA1P38398 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRCA1P38398 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRCA1P38398 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC21.27■■□□□ 1
BRCA1P38398 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.27■■□□□ 1
BRCA1P38398 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.27■■□□□ 1
BRCA1P38398 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.27■■□□□ 1
BRCA1P38398 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.27■■□□□ 1
BRCA1P38398 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.27■■□□□ 1
BRCA1P38398 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.27■■□□□ 1
BRCA1P38398 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.27■■□□□ 1
BRCA1P38398 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.27■□□□□ 0.99
BRCA1P38398 CU639417.3-201ENST00000624240 1404 ntBASIC21.26■□□□□ 0.99
BRCA1P38398 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
BRCA1P38398 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.26■□□□□ 0.99
BRCA1P38398 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.26■□□□□ 0.99
BRCA1P38398 MMP17-203ENST00000535004 719 ntTSL 3 BASIC21.26■□□□□ 0.99
BRCA1P38398 AC027307.3-201ENST00000594262 1100 ntBASIC21.26■□□□□ 0.99
BRCA1P38398 AL009183.1-201ENST00000603760 355 ntBASIC21.26■□□□□ 0.99
BRCA1P38398 AL662799.1-202ENST00000614205 422 ntBASIC21.26■□□□□ 0.99
BRCA1P38398 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BRCA1P38398 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BRCA1P38398 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.26■□□□□ 0.99
BRCA1P38398 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
BRCA1P38398 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BRCA1P38398 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.26■□□□□ 0.99
BRCA1P38398 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
BRCA1P38398 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BRCA1P38398 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.26■□□□□ 0.99
BRCA1P38398 AL671277.1-201ENST00000429656 993 ntBASIC21.26■□□□□ 0.99
BRCA1P38398 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC21.26■□□□□ 0.99
BRCA1P38398 AL645728.2-201ENST00000641974 660 ntBASIC21.26■□□□□ 0.99
BRCA1P38398 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
BRCA1P38398 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
BRCA1P38398 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
BRCA1P38398 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
BRCA1P38398 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC21.25■□□□□ 0.99
BRCA1P38398 AC241585.1-201ENST00000433527 519 ntBASIC21.25■□□□□ 0.99
BRCA1P38398 TMPRSS11CP-201ENST00000453277 683 ntBASIC21.25■□□□□ 0.99
BRCA1P38398 AC002558.1-201ENST00000488906 803 ntBASIC21.25■□□□□ 0.99
BRCA1P38398 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.25■□□□□ 0.99
BRCA1P38398 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.25■□□□□ 0.99
BRCA1P38398 AC009118.2-201ENST00000613275 655 ntBASIC21.25■□□□□ 0.99
BRCA1P38398 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.25■□□□□ 0.99
BRCA1P38398 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.25■□□□□ 0.99
BRCA1P38398 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
BRCA1P38398 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.24■□□□□ 0.99
BRCA1P38398 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms