Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC138761.1-201ENST00000584393 385 ntBASIC22.04■■□□□ 1.12
COL5A3P25940 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC22.04■■□□□ 1.12
COL5A3P25940 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC22.04■■□□□ 1.12
COL5A3P25940 AC026120.1-201ENST00000611536 926 ntBASIC22.04■■□□□ 1.12
COL5A3P25940 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC22.04■■□□□ 1.12
COL5A3P25940 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.04■■□□□ 1.12
COL5A3P25940 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL5A3P25940 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC22.04■■□□□ 1.12
COL5A3P25940 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC22.04■■□□□ 1.12
COL5A3P25940 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC22.03■■□□□ 1.12
COL5A3P25940 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
COL5A3P25940 AC129492.6-201ENST00000611383 1305 ntBASIC22.03■■□□□ 1.12
COL5A3P25940 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC22.03■■□□□ 1.12
COL5A3P25940 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC22.03■■□□□ 1.12
COL5A3P25940 INO80C-206ENST00000586489 594 ntTSL 3 BASIC22.03■■□□□ 1.12
COL5A3P25940 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC22.03■■□□□ 1.12
COL5A3P25940 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC22.03■■□□□ 1.12
COL5A3P25940 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC22.03■■□□□ 1.12
COL5A3P25940 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
COL5A3P25940 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 WIZP1-201ENST00000531444 2299 ntBASIC22.03■■□□□ 1.12
COL5A3P25940 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC22.03■■□□□ 1.12
COL5A3P25940 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC22.03■■□□□ 1.12
COL5A3P25940 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC22.03■■□□□ 1.12
COL5A3P25940 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
COL5A3P25940 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC22.03■■□□□ 1.12
COL5A3P25940 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC22.03■■□□□ 1.12
COL5A3P25940 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL5A3P25940 AP000997.3-201ENST00000623333 2250 ntBASIC22.03■■□□□ 1.12
COL5A3P25940 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A3P25940 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC22.02■■□□□ 1.12
COL5A3P25940 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A3P25940 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
COL5A3P25940 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC22.02■■□□□ 1.12
COL5A3P25940 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A3P25940 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A3P25940 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A3P25940 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC22.02■■□□□ 1.12
COL5A3P25940 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC22.02■■□□□ 1.12
COL5A3P25940 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
COL5A3P25940 VPS29-207ENST00000549970 818 ntTSL 3 BASIC22.02■■□□□ 1.12
COL5A3P25940 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
COL5A3P25940 AMT-250ENST00000637682 1823 ntTSL 5 BASIC22.02■■□□□ 1.12
COL5A3P25940 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.02■■□□□ 1.12
COL5A3P25940 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
COL5A3P25940 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A3P25940 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC22.02■■□□□ 1.12
COL5A3P25940 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL5A3P25940 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
COL5A3P25940 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
COL5A3P25940 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC22.02■■□□□ 1.11
COL5A3P25940 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC22.01■■□□□ 1.11
COL5A3P25940 AC046185.3-201ENST00000623228 1824 ntBASIC22.01■■□□□ 1.11
COL5A3P25940 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
COL5A3P25940 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC22.01■■□□□ 1.11
COL5A3P25940 INO80E-210ENST00000567705 880 ntTSL 3 BASIC22.01■■□□□ 1.11
COL5A3P25940 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC22.01■■□□□ 1.11
COL5A3P25940 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC22.01■■□□□ 1.11
COL5A3P25940 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC22.01■■□□□ 1.11
COL5A3P25940 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC22.01■■□□□ 1.11
COL5A3P25940 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
COL5A3P25940 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL5A3P25940 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
COL5A3P25940 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC22.01■■□□□ 1.11
COL5A3P25940 AL020996.1-203ENST00000536896 2307 ntBASIC22.01■■□□□ 1.11
COL5A3P25940 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
COL5A3P25940 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC22■■□□□ 1.11
COL5A3P25940 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
COL5A3P25940 AC069262.1-201ENST00000539058 672 ntBASIC22■■□□□ 1.11
COL5A3P25940 AC025678.2-201ENST00000562061 970 ntBASIC22■■□□□ 1.11
COL5A3P25940 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC22■■□□□ 1.11
COL5A3P25940 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC22■■□□□ 1.11
COL5A3P25940 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms