Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SIX3O95343 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX3O95343 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX3O95343 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX3O95343 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX3O95343 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
SIX3O95343 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.28■□□□□ 0.36
SIX3O95343 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.28■□□□□ 0.36
SIX3O95343 HOMER2P1-201ENST00000455653 964 ntBASIC17.28■□□□□ 0.36
SIX3O95343 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.28■□□□□ 0.36
SIX3O95343 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.28■□□□□ 0.36
SIX3O95343 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
SIX3O95343 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX3O95343 RNF126P1-202ENST00000569893 925 ntBASIC17.28■□□□□ 0.36
SIX3O95343 AC005332.3-201ENST00000589904 676 ntBASIC17.28■□□□□ 0.36
SIX3O95343 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SIX3O95343 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX3O95343 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SIX3O95343 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SIX3O95343 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX3O95343 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.27■□□□□ 0.36
SIX3O95343 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX3O95343 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX3O95343 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SIX3O95343 SPDYE13P-201ENST00000445314 798 ntBASIC17.27■□□□□ 0.36
SIX3O95343 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.27■□□□□ 0.36
SIX3O95343 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SIX3O95343 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX3O95343 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SIX3O95343 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX3O95343 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX3O95343 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX3O95343 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.27■□□□□ 0.36
SIX3O95343 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX3O95343 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX3O95343 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 LYSMD4-203ENST00000378904 2122 ntBASIC17.27■□□□□ 0.35
SIX3O95343 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
SIX3O95343 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
SIX3O95343 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.27■□□□□ 0.35
SIX3O95343 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
SIX3O95343 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX3O95343 BX276092.7-203ENST00000637198 1536 ntBASIC17.26■□□□□ 0.35
SIX3O95343 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SIX3O95343 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX3O95343 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SIX3O95343 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX3O95343 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms