Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 ELK2BP-201ENST00000415014 1224 ntBASIC17.25■□□□□ 0.35
SDC3O75056 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.25■□□□□ 0.35
SDC3O75056 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.25■□□□□ 0.35
SDC3O75056 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.25■□□□□ 0.35
SDC3O75056 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.25■□□□□ 0.35
SDC3O75056 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SDC3O75056 AC132938.5-201ENST00000624980 1813 ntBASIC17.25■□□□□ 0.35
SDC3O75056 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.25■□□□□ 0.35
SDC3O75056 TNXA-203ENST00000507684 2038 ntBASIC17.25■□□□□ 0.35
SDC3O75056 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC3O75056 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SDC3O75056 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC3O75056 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC3O75056 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC3O75056 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SDC3O75056 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.24■□□□□ 0.35
SDC3O75056 PRYP5-201ENST00000451909 266 ntBASIC17.24■□□□□ 0.35
SDC3O75056 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
SDC3O75056 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.24■□□□□ 0.35
SDC3O75056 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.24■□□□□ 0.35
SDC3O75056 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC3O75056 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC3O75056 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.24■□□□□ 0.35
SDC3O75056 PGM5P2-202ENST00000637225 1043 ntBASIC17.24■□□□□ 0.35
SDC3O75056 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDC3O75056 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC3O75056 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SDC3O75056 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SDC3O75056 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SDC3O75056 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SDC3O75056 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
SDC3O75056 KLF4P1-201ENST00000412782 1185 ntBASIC17.23■□□□□ 0.35
SDC3O75056 KRT18P2-201ENST00000447938 1258 ntBASIC17.23■□□□□ 0.35
SDC3O75056 AC004967.1-201ENST00000453589 447 ntBASIC17.23■□□□□ 0.35
SDC3O75056 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.23■□□□□ 0.35
SDC3O75056 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.23■□□□□ 0.35
SDC3O75056 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SDC3O75056 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.23■□□□□ 0.35
SDC3O75056 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.23■□□□□ 0.35
SDC3O75056 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SDC3O75056 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SDC3O75056 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 AL353593.2-201ENST00000602529 1483 ntBASIC17.23■□□□□ 0.35
SDC3O75056 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 AC006504.4-201ENST00000592118 1568 ntBASIC17.23■□□□□ 0.35
SDC3O75056 AL049757.1-201ENST00000616842 1596 ntBASIC17.23■□□□□ 0.35
SDC3O75056 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC3O75056 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SDC3O75056 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC3O75056 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.22■□□□□ 0.35
SDC3O75056 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
SDC3O75056 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SDC3O75056 AC004832.2-201ENST00000426397 482 ntBASIC17.22■□□□□ 0.35
SDC3O75056 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC3O75056 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SDC3O75056 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms