Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
UBFD1O14562 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
UBFD1O14562 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
UBFD1O14562 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
UBFD1O14562 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
UBFD1O14562 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
UBFD1O14562 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
UBFD1O14562 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
UBFD1O14562 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.15■□□□□ 0.34
UBFD1O14562 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
UBFD1O14562 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
UBFD1O14562 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
UBFD1O14562 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.14■□□□□ 0.33
UBFD1O14562 AC016396.2-201ENST00000562575 1417 ntBASIC17.14■□□□□ 0.33
UBFD1O14562 LINC01311-201ENST00000565162 1445 ntBASIC17.14■□□□□ 0.33
UBFD1O14562 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 AC116353.5-201ENST00000638148 1699 ntBASIC17.14■□□□□ 0.33
UBFD1O14562 AGGF1P2-201ENST00000426656 2106 ntBASIC17.14■□□□□ 0.33
UBFD1O14562 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.14■□□□□ 0.33
UBFD1O14562 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
UBFD1O14562 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.14■□□□□ 0.33
UBFD1O14562 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.14■□□□□ 0.33
UBFD1O14562 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 AC113347.1-201ENST00000413321 391 ntBASIC17.14■□□□□ 0.33
UBFD1O14562 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.14■□□□□ 0.33
UBFD1O14562 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.14■□□□□ 0.33
UBFD1O14562 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
UBFD1O14562 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.14■□□□□ 0.33
UBFD1O14562 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.14■□□□□ 0.33
UBFD1O14562 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.14■□□□□ 0.33
UBFD1O14562 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
UBFD1O14562 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
UBFD1O14562 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
UBFD1O14562 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
UBFD1O14562 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 HTR7P1-202ENST00000624664 4411 ntBASIC17.13■□□□□ 0.33
UBFD1O14562 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.13■□□□□ 0.33
UBFD1O14562 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
UBFD1O14562 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
UBFD1O14562 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 HBZP1-201ENST00000354915 429 ntBASIC17.13■□□□□ 0.33
UBFD1O14562 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.13■□□□□ 0.33
UBFD1O14562 FAM8A6P-201ENST00000407496 1135 ntBASIC17.13■□□□□ 0.33
UBFD1O14562 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.13■□□□□ 0.33
UBFD1O14562 BX664615.1-201ENST00000443558 458 ntBASIC17.13■□□□□ 0.33
UBFD1O14562 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.13■□□□□ 0.33
UBFD1O14562 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.13■□□□□ 0.33
UBFD1O14562 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.13■□□□□ 0.33
UBFD1O14562 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.13■□□□□ 0.33
UBFD1O14562 AC097493.4-201ENST00000641197 219 ntBASIC17.13■□□□□ 0.33
UBFD1O14562 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
UBFD1O14562 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
UBFD1O14562 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.13■□□□□ 0.33
UBFD1O14562 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.13■□□□□ 0.33
UBFD1O14562 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.13■□□□□ 0.33
UBFD1O14562 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.13■□□□□ 0.33
UBFD1O14562 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.13■□□□□ 0.33
UBFD1O14562 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.13■□□□□ 0.33
UBFD1O14562 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
UBFD1O14562 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
UBFD1O14562 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
UBFD1O14562 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.12■□□□□ 0.33
UBFD1O14562 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms