Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CACNA1AO00555 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.44■□□□□ 0.22
CACNA1AO00555 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.44■□□□□ 0.22
CACNA1AO00555 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.44■□□□□ 0.22
CACNA1AO00555 AL118558.3-201ENST00000607414 1079 ntBASIC16.44■□□□□ 0.22
CACNA1AO00555 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CACNA1AO00555 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.43■□□□□ 0.22
CACNA1AO00555 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.43■□□□□ 0.22
CACNA1AO00555 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.43■□□□□ 0.22
CACNA1AO00555 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 AC073314.1-201ENST00000568729 2216 ntBASIC16.43■□□□□ 0.22
CACNA1AO00555 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 MIR1908-201ENST00000410394 80 ntBASIC16.43■□□□□ 0.22
CACNA1AO00555 GOLGA2P4-201ENST00000441462 777 ntBASIC16.43■□□□□ 0.22
CACNA1AO00555 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.43■□□□□ 0.22
CACNA1AO00555 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.43■□□□□ 0.22
CACNA1AO00555 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.43■□□□□ 0.22
CACNA1AO00555 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.43■□□□□ 0.22
CACNA1AO00555 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CACNA1AO00555 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CACNA1AO00555 BTBD7P1-201ENST00000447253 1453 ntBASIC16.42■□□□□ 0.22
CACNA1AO00555 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.42■□□□□ 0.22
CACNA1AO00555 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CACNA1AO00555 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC16.42■□□□□ 0.22
CACNA1AO00555 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.42■□□□□ 0.22
CACNA1AO00555 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.42■□□□□ 0.22
CACNA1AO00555 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.42■□□□□ 0.22
CACNA1AO00555 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.42■□□□□ 0.22
CACNA1AO00555 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.42■□□□□ 0.22
CACNA1AO00555 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.42■□□□□ 0.22
CACNA1AO00555 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.42■□□□□ 0.22
CACNA1AO00555 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CACNA1AO00555 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.42■□□□□ 0.22
CACNA1AO00555 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.42■□□□□ 0.22
CACNA1AO00555 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.42■□□□□ 0.22
CACNA1AO00555 AL513480.1-201ENST00000451731 511 ntBASIC16.42■□□□□ 0.22
CACNA1AO00555 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.42■□□□□ 0.22
CACNA1AO00555 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.42■□□□□ 0.22
CACNA1AO00555 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CACNA1AO00555 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CACNA1AO00555 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.41■□□□□ 0.22
CACNA1AO00555 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.41■□□□□ 0.22
CACNA1AO00555 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 WASH4P-201ENST00000564273 1246 ntBASIC16.41■□□□□ 0.22
CACNA1AO00555 MIR4722-201ENST00000578292 60 ntBASIC16.41■□□□□ 0.22
CACNA1AO00555 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 CHCHD2P3-201ENST00000603038 451 ntBASIC16.41■□□□□ 0.22
CACNA1AO00555 AC244093.1-201ENST00000610837 814 ntBASIC16.41■□□□□ 0.22
CACNA1AO00555 MIR6775-201ENST00000617557 69 ntBASIC16.41■□□□□ 0.22
CACNA1AO00555 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.41■□□□□ 0.22
CACNA1AO00555 AL645728.2-201ENST00000641974 660 ntBASIC16.41■□□□□ 0.22
CACNA1AO00555 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms