Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLDN16Q9Y5I7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 TPM4P1-201ENST00000436100 807 ntBASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 AP002469.2-201ENST00000531724 424 ntBASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 NKAPP1-205ENST00000585790 367 ntBASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CLDN16Q9Y5I7 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 LINC00896-202ENST00000609602 2128 ntBASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 AL160237.2-201ENST00000556165 472 ntBASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 AL139327.4-201ENST00000612362 153 ntBASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 LYSMD4-203ENST00000378904 2122 ntBASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 AC004817.3-201ENST00000602957 2129 ntBASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN16Q9Y5I7 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CLDN16Q9Y5I7 AC009336.1-201ENST00000608941 1553 ntBASIC16.39■□□□□ 0.21
CLDN16Q9Y5I7 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN16Q9Y5I7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN16Q9Y5I7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLDN16Q9Y5I7 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.39■□□□□ 0.21
CLDN16Q9Y5I7 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN16Q9Y5I7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN16Q9Y5I7 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms