Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 AC106028.4-201ENST00000614509 607 ntBASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 AC073592.4-201ENST00000623827 446 ntBASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMD1Q9UGP4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 AL161938.1-201ENST00000569833 2180 ntBASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 AL049812.1-201ENST00000432563 2267 ntBASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 AC018845.2-201ENST00000568326 409 ntBASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 AL589935.2-201ENST00000616471 1231 ntBASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMD1Q9UGP4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 MIR770-201ENST00000390219 98 ntBASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 AL078644.1-201ENST00000609881 752 ntBASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMD1Q9UGP4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LIMD1Q9UGP4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
LIMD1Q9UGP4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms