Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 LINC01023-201ENST00000606054 436 ntBASIC15.83■□□□□ 0.12
VSX1Q9NZR4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VSX1Q9NZR4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 AC112907.2-201ENST00000448639 330 ntBASIC15.82■□□□□ 0.12
VSX1Q9NZR4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 BX276092.7-203ENST00000637198 1536 ntBASIC15.82■□□□□ 0.12
VSX1Q9NZR4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
VSX1Q9NZR4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 MTCL1P1-201ENST00000446207 792 ntBASIC15.81■□□□□ 0.12
VSX1Q9NZR4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 AL359075.1-203ENST00000462729 1002 ntBASIC15.81■□□□□ 0.12
VSX1Q9NZR4 AC068472.1-201ENST00000474589 881 ntBASIC15.81■□□□□ 0.12
VSX1Q9NZR4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 AC005332.3-201ENST00000589904 676 ntBASIC15.81■□□□□ 0.12
VSX1Q9NZR4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms