Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.24■□□□□ 0.83
USP28Q96RU2 LINC01311-201ENST00000565162 1445 ntBASIC20.24■□□□□ 0.83
USP28Q96RU2 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.24■□□□□ 0.83
USP28Q96RU2 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 Z83836.1-201ENST00000624605 1642 ntBASIC20.24■□□□□ 0.83
USP28Q96RU2 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.23■□□□□ 0.83
USP28Q96RU2 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
USP28Q96RU2 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 AC096633.1-201ENST00000422446 749 ntBASIC20.23■□□□□ 0.83
USP28Q96RU2 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
USP28Q96RU2 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.23■□□□□ 0.83
USP28Q96RU2 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.23■□□□□ 0.83
USP28Q96RU2 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP28Q96RU2 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.23■□□□□ 0.83
USP28Q96RU2 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
USP28Q96RU2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.22■□□□□ 0.83
USP28Q96RU2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.22■□□□□ 0.83
USP28Q96RU2 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
USP28Q96RU2 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
USP28Q96RU2 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.22■□□□□ 0.83
USP28Q96RU2 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
USP28Q96RU2 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.22■□□□□ 0.83
USP28Q96RU2 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.22■□□□□ 0.83
USP28Q96RU2 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
USP28Q96RU2 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
USP28Q96RU2 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
USP28Q96RU2 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 NKILA-202ENST00000614771 2598 ntBASIC20.22■□□□□ 0.83
USP28Q96RU2 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.22■□□□□ 0.83
USP28Q96RU2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
USP28Q96RU2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP28Q96RU2 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP28Q96RU2 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 AC010460.3-201ENST00000511359 1579 ntBASIC20.21■□□□□ 0.83
USP28Q96RU2 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.21■□□□□ 0.83
USP28Q96RU2 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.21■□□□□ 0.83
USP28Q96RU2 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.21■□□□□ 0.83
USP28Q96RU2 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.21■□□□□ 0.83
USP28Q96RU2 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.21■□□□□ 0.83
USP28Q96RU2 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.21■□□□□ 0.83
USP28Q96RU2 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 AC011676.5-201ENST00000624864 2660 ntBASIC20.21■□□□□ 0.83
USP28Q96RU2 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
USP28Q96RU2 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.21■□□□□ 0.83
USP28Q96RU2 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
USP28Q96RU2 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP28Q96RU2 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
USP28Q96RU2 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms