Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS33AQ96AX1 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS33AQ96AX1 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS33AQ96AX1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS33AQ96AX1 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS33AQ96AX1 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS33AQ96AX1 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.03■□□□□ 0.32
VPS33AQ96AX1 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 AL121761.2-201ENST00000598007 1648 ntBASIC17.03■□□□□ 0.32
VPS33AQ96AX1 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS33AQ96AX1 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 MIR3917-201ENST00000580971 93 ntBASIC17.02■□□□□ 0.32
VPS33AQ96AX1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
VPS33AQ96AX1 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.02■□□□□ 0.31
VPS33AQ96AX1 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS33AQ96AX1 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.02■□□□□ 0.31
VPS33AQ96AX1 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.02■□□□□ 0.31
VPS33AQ96AX1 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.02■□□□□ 0.31
VPS33AQ96AX1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 AL355075.4-201ENST00000554988 638 ntBASIC17.01■□□□□ 0.31
VPS33AQ96AX1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS33AQ96AX1 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms