Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 AC008608.2-201ENST00000606089 416 ntBASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 AC019129.2-201ENST00000609837 1235 ntBASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 AC027601.4-201ENST00000611259 610 ntBASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 COX5BP2-201ENST00000392354 334 ntBASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 MIR7706-201ENST00000613747 67 ntBASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-3Q8TAU0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NKX2-3Q8TAU0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.89■□□□□ 0.94
NKX2-3Q8TAU0 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
NKX2-3Q8TAU0 PP12613-201ENST00000424958 2230 ntBASIC20.89■□□□□ 0.94
NKX2-3Q8TAU0 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NKX2-3Q8TAU0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
NKX2-3Q8TAU0 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NKX2-3Q8TAU0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 SCARNA2-201ENST00000458748 420 ntBASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 AC009533.2-201ENST00000543664 586 ntBASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 FAM197Y3-203ENST00000618346 717 ntBASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 AL049757.1-201ENST00000616842 1596 ntBASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NKX2-3Q8TAU0 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 MIR3687-2-201ENST00000577708 61 ntBASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 MIR3687-1-201ENST00000614492 61 ntBASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 FAM215A-202ENST00000632077 792 ntBASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-3Q8TAU0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms