Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
CLHC1Q8NHS4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.02■□□□□ 0.31
CLHC1Q8NHS4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLHC1Q8NHS4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 OR6D1P-203ENST00000641209 4860 ntBASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 PRORSD1P-202ENST00000563365 2154 ntBASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 HLA-J-201ENST00000462773 1622 ntBASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 KRT18P65-201ENST00000439811 1286 ntBASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 AL138688.1-201ENST00000624851 1594 ntBASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CLHC1Q8NHS4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 AL137013.1-201ENST00000432946 1228 ntBASIC17■□□□□ 0.31
CLHC1Q8NHS4 KRT18P48-201ENST00000434763 852 ntBASIC17■□□□□ 0.31
CLHC1Q8NHS4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17■□□□□ 0.31
CLHC1Q8NHS4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLHC1Q8NHS4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CLHC1Q8NHS4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 TERF1P1-201ENST00000311003 1181 ntBASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 AC113347.1-201ENST00000413321 391 ntBASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 KRT18P57-201ENST00000443599 1254 ntBASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms