Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 SART3-203ENST00000546611 1184 ntBASIC19.2■□□□□ 0.66
VPS52Q8N1B4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS52Q8N1B4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS52Q8N1B4 AC073592.3-201ENST00000625118 1834 ntBASIC19.18■□□□□ 0.66
VPS52Q8N1B4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 AC126763.1-201ENST00000552015 2118 ntBASIC19.18■□□□□ 0.66
VPS52Q8N1B4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 RPS2P1-201ENST00000434010 821 ntBASIC19.18■□□□□ 0.66
VPS52Q8N1B4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS52Q8N1B4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 AC112698.1-201ENST00000510299 916 ntBASIC19.17■□□□□ 0.66
VPS52Q8N1B4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS52Q8N1B4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms