Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC23.35■■□□□ 1.33
USP54Q70EL1 AC025580.3-201ENST00000617932 1424 ntBASIC23.35■■□□□ 1.33
USP54Q70EL1 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC23.35■■□□□ 1.33
USP54Q70EL1 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
USP54Q70EL1 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC23.35■■□□□ 1.33
USP54Q70EL1 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC23.35■■□□□ 1.33
USP54Q70EL1 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23.35■■□□□ 1.33
USP54Q70EL1 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC23.34■■□□□ 1.33
USP54Q70EL1 AC090164.3-201ENST00000610780 2143 ntBASIC23.34■■□□□ 1.33
USP54Q70EL1 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
USP54Q70EL1 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC23.34■■□□□ 1.33
USP54Q70EL1 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC23.34■■□□□ 1.33
USP54Q70EL1 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
USP54Q70EL1 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC23.34■■□□□ 1.33
USP54Q70EL1 AP002472.1-201ENST00000577490 586 ntBASIC23.34■■□□□ 1.33
USP54Q70EL1 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP54Q70EL1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
USP54Q70EL1 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC23.34■■□□□ 1.33
USP54Q70EL1 AC138028.4-201ENST00000564984 1845 ntBASIC23.34■■□□□ 1.33
USP54Q70EL1 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
USP54Q70EL1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP54Q70EL1 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC23.33■■□□□ 1.33
USP54Q70EL1 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USP54Q70EL1 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USP54Q70EL1 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.33
USP54Q70EL1 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP54Q70EL1 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USP54Q70EL1 AC140658.5-201ENST00000438532 169 ntBASIC23.33■■□□□ 1.33
USP54Q70EL1 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
USP54Q70EL1 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC23.33■■□□□ 1.33
USP54Q70EL1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC23.33■■□□□ 1.33
USP54Q70EL1 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
USP54Q70EL1 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
USP54Q70EL1 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
USP54Q70EL1 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC23.33■■□□□ 1.32
USP54Q70EL1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
USP54Q70EL1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
USP54Q70EL1 AC004461.1-201ENST00000412461 403 ntBASIC23.32■■□□□ 1.32
USP54Q70EL1 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC23.32■■□□□ 1.32
USP54Q70EL1 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC23.32■■□□□ 1.32
USP54Q70EL1 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC23.32■■□□□ 1.32
USP54Q70EL1 METTL23-205ENST00000588302 925 ntTSL 5 BASIC23.32■■□□□ 1.32
USP54Q70EL1 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
USP54Q70EL1 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
USP54Q70EL1 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
USP54Q70EL1 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC23.32■■□□□ 1.32
USP54Q70EL1 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC23.32■■□□□ 1.32
USP54Q70EL1 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
USP54Q70EL1 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
USP54Q70EL1 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC23.32■■□□□ 1.32
USP54Q70EL1 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC23.32■■□□□ 1.32
USP54Q70EL1 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
USP54Q70EL1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC23.32■■□□□ 1.32
USP54Q70EL1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USP54Q70EL1 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC23.31■■□□□ 1.32
USP54Q70EL1 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USP54Q70EL1 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
USP54Q70EL1 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC23.31■■□□□ 1.32
USP54Q70EL1 AL355306.1-201ENST00000415580 579 ntBASIC23.31■■□□□ 1.32
USP54Q70EL1 AC074386.1-202ENST00000463561 864 ntBASIC23.31■■□□□ 1.32
USP54Q70EL1 SNHG9-202ENST00000564014 471 ntBASIC23.31■■□□□ 1.32
USP54Q70EL1 AL139327.4-201ENST00000612362 153 ntBASIC23.31■■□□□ 1.32
USP54Q70EL1 LINC01451-201ENST00000623792 534 ntBASIC23.31■■□□□ 1.32
USP54Q70EL1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
USP54Q70EL1 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USP54Q70EL1 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
USP54Q70EL1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
USP54Q70EL1 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.31■■□□□ 1.32
USP54Q70EL1 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
USP54Q70EL1 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USP54Q70EL1 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC23.3■■□□□ 1.32
USP54Q70EL1 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
USP54Q70EL1 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USP54Q70EL1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
USP54Q70EL1 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms