Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 LINC00304-203ENST00000565008 1864 ntBASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 AC141586.5-201ENST00000624546 2050 ntBASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC40Q4G0X9 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 PRORSD1P-202ENST00000563365 2154 ntBASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 HYMAI.1-201ENST00000620949 238 ntBASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC40Q4G0X9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 AL645608.8-201ENST00000606034 2086 ntBASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 RN7SL850P-201ENST00000579959 291 ntBASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 AC005332.3-201ENST00000589904 676 ntBASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC40Q4G0X9 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 HLA-J-201ENST00000462773 1622 ntBASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 AC063952.2-201ENST00000498792 1227 ntBASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 AC022616.7-201ENST00000525383 220 ntBASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms