Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 AC003669.1-201ENST00000334569 611 ntBASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 RPS15P9-201ENST00000494093 319 ntBASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 AC004790.2-201ENST00000623588 572 ntBASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 IGLL3P-201ENST00000412472 434 ntBASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 AC004832.2-201ENST00000426397 482 ntBASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 AL513190.1-201ENST00000621254 727 ntBASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 AC009336.1-201ENST00000608941 1553 ntBASIC20.55■□□□□ 0.88
SHROOM1Q2M3G4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 NCF1C-201ENST00000438382 1427 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 BX276092.7-203ENST00000637198 1536 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 AC097637.2-201ENST00000624096 1997 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 DDX43P3-201ENST00000441064 443 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 SIGLEC30P-201ENST00000455569 941 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 ALG1L5P-201ENST00000482043 771 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 STK19B-204ENST00000512515 211 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 AC134684.3-201ENST00000641758 218 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 REXO1L11P-201ENST00000620964 1927 ntBASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM1Q2M3G4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 HCG4B-203ENST00000450128 991 ntBASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.53■□□□□ 0.88
SHROOM1Q2M3G4 IGHV3-65-201ENST00000523210 341 ntBASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms