Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.6■□□□□ 0.57
USP46P62068 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.6■□□□□ 0.57
USP46P62068 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.6■□□□□ 0.57
USP46P62068 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 COX5BP2-201ENST00000392354 334 ntBASIC18.6■□□□□ 0.57
USP46P62068 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.6■□□□□ 0.57
USP46P62068 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.6■□□□□ 0.57
USP46P62068 AC122714.2-201ENST00000502787 707 ntBASIC18.6■□□□□ 0.57
USP46P62068 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
USP46P62068 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.6■□□□□ 0.57
USP46P62068 AL049840.3-201ENST00000602669 611 ntBASIC18.6■□□□□ 0.57
USP46P62068 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 AL773604.1-201ENST00000617417 272 ntBASIC18.6■□□□□ 0.57
USP46P62068 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
USP46P62068 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.6■□□□□ 0.57
USP46P62068 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
USP46P62068 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.6■□□□□ 0.57
USP46P62068 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP46P62068 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
USP46P62068 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
USP46P62068 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
USP46P62068 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
USP46P62068 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.59■□□□□ 0.57
USP46P62068 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.59■□□□□ 0.57
USP46P62068 AL031284.1-201ENST00000419297 478 ntBASIC18.59■□□□□ 0.57
USP46P62068 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.59■□□□□ 0.57
USP46P62068 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 AC021087.4-201ENST00000563761 564 ntBASIC18.59■□□□□ 0.57
USP46P62068 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.59■□□□□ 0.57
USP46P62068 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
USP46P62068 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.59■□□□□ 0.57
USP46P62068 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.59■□□□□ 0.57
USP46P62068 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.59■□□□□ 0.57
USP46P62068 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.59■□□□□ 0.57
USP46P62068 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.59■□□□□ 0.57
USP46P62068 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USP46P62068 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USP46P62068 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.59■□□□□ 0.57
USP46P62068 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP46P62068 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
USP46P62068 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
USP46P62068 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USP46P62068 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP46P62068 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP46P62068 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USP46P62068 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP46P62068 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USP46P62068 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP46P62068 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.58■□□□□ 0.56
USP46P62068 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.58■□□□□ 0.56
USP46P62068 AF186996.4-201ENST00000467186 377 ntBASIC18.58■□□□□ 0.56
USP46P62068 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.58■□□□□ 0.56
USP46P62068 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.58■□□□□ 0.56
USP46P62068 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
USP46P62068 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.58■□□□□ 0.56
USP46P62068 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.58■□□□□ 0.56
USP46P62068 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 AD001527.2-201ENST00000622994 785 ntBASIC18.58■□□□□ 0.56
USP46P62068 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
USP46P62068 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
USP46P62068 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.58■□□□□ 0.56
USP46P62068 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
USP46P62068 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP46P62068 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms