Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
SRP54P61011 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SRP54P61011 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SRP54P61011 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SRP54P61011 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.46■□□□□ 0.38
SRP54P61011 IL9RP2-201ENST00000423948 1312 ntBASIC17.46■□□□□ 0.38
SRP54P61011 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
SRP54P61011 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.45■□□□□ 0.38
SRP54P61011 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
SRP54P61011 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SRP54P61011 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.45■□□□□ 0.38
SRP54P61011 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SRP54P61011 COX5BP2-201ENST00000392354 334 ntBASIC17.45■□□□□ 0.38
SRP54P61011 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 HNRNPDP1-201ENST00000439535 754 ntBASIC17.45■□□□□ 0.38
SRP54P61011 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.45■□□□□ 0.38
SRP54P61011 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 AL139288.1-201ENST00000623748 933 ntBASIC17.45■□□□□ 0.38
SRP54P61011 FAM215A-202ENST00000632077 792 ntBASIC17.45■□□□□ 0.38
SRP54P61011 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
SRP54P61011 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.45■□□□□ 0.38
SRP54P61011 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.45■□□□□ 0.38
SRP54P61011 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SRP54P61011 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
SRP54P61011 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.44■□□□□ 0.38
SRP54P61011 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.44■□□□□ 0.38
SRP54P61011 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.44■□□□□ 0.38
SRP54P61011 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.44■□□□□ 0.38
SRP54P61011 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
SRP54P61011 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.44■□□□□ 0.38
SRP54P61011 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.44■□□□□ 0.38
SRP54P61011 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.44■□□□□ 0.38
SRP54P61011 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.44■□□□□ 0.38
SRP54P61011 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.44■□□□□ 0.38
SRP54P61011 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.44■□□□□ 0.38
SRP54P61011 AL049840.3-201ENST00000602669 611 ntBASIC17.44■□□□□ 0.38
SRP54P61011 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
SRP54P61011 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.44■□□□□ 0.38
SRP54P61011 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SRP54P61011 NOC2LP1-202ENST00000452600 2235 ntBASIC17.44■□□□□ 0.38
SRP54P61011 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SRP54P61011 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
SRP54P61011 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SRP54P61011 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.43■□□□□ 0.38
SRP54P61011 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.43■□□□□ 0.38
SRP54P61011 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 LTB4R2-202ENST00000528054 3092 ntBASIC17.43■□□□□ 0.38
SRP54P61011 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SRP54P61011 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SRP54P61011 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 AC103564.2-201ENST00000432853 1299 ntBASIC17.43■□□□□ 0.38
SRP54P61011 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.43■□□□□ 0.38
SRP54P61011 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.43■□□□□ 0.38
SRP54P61011 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.43■□□□□ 0.38
SRP54P61011 NKAPP1-205ENST00000585790 367 ntBASIC17.43■□□□□ 0.38
SRP54P61011 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SRP54P61011 REXO1L9P-201ENST00000604264 2108 ntBASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms