Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL12P48061 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL12P48061 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.39
CXCL12P48061 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL12P48061 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CXCL12P48061 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL12P48061 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL12P48061 BX276092.7-203ENST00000637198 1536 ntBASIC17.52■□□□□ 0.39
CXCL12P48061 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.52■□□□□ 0.39
CXCL12P48061 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CXCL12P48061 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
CXCL12P48061 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.51■□□□□ 0.39
CXCL12P48061 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.51■□□□□ 0.39
CXCL12P48061 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CXCL12P48061 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.51■□□□□ 0.39
CXCL12P48061 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.51■□□□□ 0.39
CXCL12P48061 AC190387.1-201ENST00000551683 408 ntBASIC17.51■□□□□ 0.39
CXCL12P48061 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.51■□□□□ 0.39
CXCL12P48061 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CXCL12P48061 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CXCL12P48061 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.51■□□□□ 0.39
CXCL12P48061 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CXCL12P48061 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 AC126763.1-201ENST00000552015 2118 ntBASIC17.51■□□□□ 0.39
CXCL12P48061 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CXCL12P48061 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CXCL12P48061 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL12P48061 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.5■□□□□ 0.39
CXCL12P48061 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CXCL12P48061 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.5■□□□□ 0.39
CXCL12P48061 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.5■□□□□ 0.39
CXCL12P48061 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.5■□□□□ 0.39
CXCL12P48061 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.5■□□□□ 0.39
CXCL12P48061 AC112191.1-201ENST00000523689 701 ntBASIC17.5■□□□□ 0.39
CXCL12P48061 AC069262.1-201ENST00000539058 672 ntBASIC17.5■□□□□ 0.39
CXCL12P48061 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.5■□□□□ 0.39
CXCL12P48061 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.5■□□□□ 0.39
CXCL12P48061 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CXCL12P48061 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.5■□□□□ 0.39
CXCL12P48061 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CXCL12P48061 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CXCL12P48061 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.5■□□□□ 0.39
CXCL12P48061 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.5■□□□□ 0.39
CXCL12P48061 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CXCL12P48061 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL12P48061 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
CXCL12P48061 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.49■□□□□ 0.39
CXCL12P48061 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.49■□□□□ 0.39
CXCL12P48061 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.49■□□□□ 0.39
CXCL12P48061 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.49■□□□□ 0.39
CXCL12P48061 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.49■□□□□ 0.39
CXCL12P48061 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.49■□□□□ 0.39
CXCL12P48061 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.49■□□□□ 0.39
CXCL12P48061 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.49■□□□□ 0.39
CXCL12P48061 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 AC067863.1-201ENST00000494933 530 ntBASIC17.49■□□□□ 0.39
CXCL12P48061 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.49■□□□□ 0.39
CXCL12P48061 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.49■□□□□ 0.39
CXCL12P48061 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.49■□□□□ 0.39
CXCL12P48061 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CXCL12P48061 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CXCL12P48061 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms