Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC29.35■■■□□ 2.29
CUX1P39880 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
CUX1P39880 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC29.35■■■□□ 2.29
CUX1P39880 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CUX1P39880 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
CUX1P39880 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
CUX1P39880 MYCLP1-201ENST00000372451 1075 ntBASIC29.35■■■□□ 2.29
CUX1P39880 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC29.35■■■□□ 2.29
CUX1P39880 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC29.35■■■□□ 2.29
CUX1P39880 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC29.35■■■□□ 2.29
CUX1P39880 TIMM8BP1-201ENST00000452384 211 ntBASIC29.35■■■□□ 2.29
CUX1P39880 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC29.35■■■□□ 2.29
CUX1P39880 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC29.35■■■□□ 2.29
CUX1P39880 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX1P39880 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX1P39880 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
CUX1P39880 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC29.34■■■□□ 2.29
CUX1P39880 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX1P39880 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC29.34■■■□□ 2.29
CUX1P39880 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC29.34■■■□□ 2.29
CUX1P39880 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
CUX1P39880 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX1P39880 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CUX1P39880 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC29.34■■■□□ 2.29
CUX1P39880 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC29.34■■■□□ 2.29
CUX1P39880 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
CUX1P39880 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
CUX1P39880 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC29.33■■■□□ 2.29
CUX1P39880 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 AC140658.5-201ENST00000438532 169 ntBASIC29.33■■■□□ 2.29
CUX1P39880 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC29.33■■■□□ 2.29
CUX1P39880 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC29.33■■■□□ 2.29
CUX1P39880 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC29.32■■■□□ 2.28
CUX1P39880 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC29.32■■■□□ 2.28
CUX1P39880 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 ENSA-206ENST00000361631 725 ntTSL 2 BASIC29.32■■■□□ 2.28
CUX1P39880 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 HLA-DRB6-201ENST00000411500 1235 ntBASIC29.32■■■□□ 2.28
CUX1P39880 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 AC025678.2-201ENST00000562061 970 ntBASIC29.32■■■□□ 2.28
CUX1P39880 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 MIR4745-201ENST00000577608 62 ntBASIC29.32■■■□□ 2.28
CUX1P39880 AC116407.2-201ENST00000613639 860 ntBASIC29.32■■■□□ 2.28
CUX1P39880 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 FLYWCH1P1-201ENST00000460917 1874 ntBASIC29.32■■■□□ 2.28
CUX1P39880 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC29.32■■■□□ 2.28
CUX1P39880 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CUX1P39880 BSG-215ENST00000618006 1329 ntTSL 2 BASIC29.32■■■□□ 2.28
CUX1P39880 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC29.32■■■□□ 2.28
CUX1P39880 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC29.32■■■□□ 2.28
CUX1P39880 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC29.31■■■□□ 2.28
CUX1P39880 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC29.31■■■□□ 2.28
CUX1P39880 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC29.31■■■□□ 2.28
CUX1P39880 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 INO80E-210ENST00000567705 880 ntTSL 3 BASIC29.31■■■□□ 2.28
CUX1P39880 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC29.31■■■□□ 2.28
CUX1P39880 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC29.31■■■□□ 2.28
CUX1P39880 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC29.31■■■□□ 2.28
CUX1P39880 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC29.31■■■□□ 2.28
CUX1P39880 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC29.31■■■□□ 2.28
CUX1P39880 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC29.31■■■□□ 2.28
CUX1P39880 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
CUX1P39880 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
CUX1P39880 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC29.3■■■□□ 2.28
CUX1P39880 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
CUX1P39880 DUX4L27-201ENST00000554796 1261 ntBASIC29.3■■■□□ 2.28
CUX1P39880 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC29.3■■■□□ 2.28
CUX1P39880 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
CUX1P39880 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC29.3■■■□□ 2.28
CUX1P39880 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
CUX1P39880 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
CUX1P39880 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.28
CUX1P39880 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC29.3■■■□□ 2.28
CUX1P39880 NMU-203ENST00000507338 658 ntTSL 3 BASIC29.3■■■□□ 2.28
CUX1P39880 AC026120.1-201ENST00000611536 926 ntBASIC29.3■■■□□ 2.28
CUX1P39880 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
CUX1P39880 AL135999.2-201ENST00000622438 1686 ntBASIC29.29■■■□□ 2.28
CUX1P39880 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC29.29■■■□□ 2.28
CUX1P39880 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC29.29■■■□□ 2.28
CUX1P39880 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CUX1P39880 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC29.29■■■□□ 2.28
CUX1P39880 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC29.29■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms