Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC23.12■■□□□ 1.29
COL18A1P39060 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.12■■□□□ 1.29
COL18A1P39060 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
COL18A1P39060 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC23.12■■□□□ 1.29
COL18A1P39060 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC23.12■■□□□ 1.29
COL18A1P39060 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC23.12■■□□□ 1.29
COL18A1P39060 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC23.12■■□□□ 1.29
COL18A1P39060 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 AC138761.1-201ENST00000584393 385 ntBASIC23.12■■□□□ 1.29
COL18A1P39060 AC239800.4-201ENST00000603712 296 ntBASIC23.12■■□□□ 1.29
COL18A1P39060 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC23.12■■□□□ 1.29
COL18A1P39060 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
COL18A1P39060 AC135776.1-201ENST00000319817 2481 ntBASIC23.12■■□□□ 1.29
COL18A1P39060 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC23.12■■□□□ 1.29
COL18A1P39060 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC23.12■■□□□ 1.29
COL18A1P39060 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC23.12■■□□□ 1.29
COL18A1P39060 AQP6-203ENST00000551733 849 ntTSL 3 BASIC23.12■■□□□ 1.29
COL18A1P39060 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
COL18A1P39060 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC23.12■■□□□ 1.29
COL18A1P39060 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL18A1P39060 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL18A1P39060 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
COL18A1P39060 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.11■■□□□ 1.29
COL18A1P39060 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
COL18A1P39060 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.11■■□□□ 1.29
COL18A1P39060 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC23.11■■□□□ 1.29
COL18A1P39060 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL18A1P39060 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
COL18A1P39060 KRT18P32-201ENST00000424695 1287 ntBASIC23.11■■□□□ 1.29
COL18A1P39060 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC23.11■■□□□ 1.29
COL18A1P39060 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC23.11■■□□□ 1.29
COL18A1P39060 TIMM8BP1-201ENST00000452384 211 ntBASIC23.11■■□□□ 1.29
COL18A1P39060 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC23.11■■□□□ 1.29
COL18A1P39060 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL18A1P39060 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC23.11■■□□□ 1.29
COL18A1P39060 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL18A1P39060 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL18A1P39060 AL135999.2-201ENST00000622438 1686 ntBASIC23.11■■□□□ 1.29
COL18A1P39060 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC23.11■■□□□ 1.29
COL18A1P39060 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC23.11■■□□□ 1.29
COL18A1P39060 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL18A1P39060 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL18A1P39060 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC23.1■■□□□ 1.29
COL18A1P39060 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
COL18A1P39060 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC23.1■■□□□ 1.29
COL18A1P39060 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
COL18A1P39060 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC23.1■■□□□ 1.29
COL18A1P39060 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 FAM185BP-201ENST00000443595 716 ntBASIC23.1■■□□□ 1.29
COL18A1P39060 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
COL18A1P39060 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC23.1■■□□□ 1.29
COL18A1P39060 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC23.1■■□□□ 1.29
COL18A1P39060 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC23.1■■□□□ 1.29
COL18A1P39060 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL18A1P39060 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC23.1■■□□□ 1.29
COL18A1P39060 HARS-203ENST00000431330 1774 ntTSL 2 BASIC23.09■■□□□ 1.29
COL18A1P39060 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
COL18A1P39060 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
COL18A1P39060 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
COL18A1P39060 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC23.09■■□□□ 1.29
COL18A1P39060 AP001059.3-201ENST00000619053 235 ntBASIC23.09■■□□□ 1.29
COL18A1P39060 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.09■■□□□ 1.29
COL18A1P39060 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL18A1P39060 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL18A1P39060 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
COL18A1P39060 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL18A1P39060 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
COL18A1P39060 FAM86GP-201ENST00000448322 971 ntBASIC23.09■■□□□ 1.29
COL18A1P39060 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL18A1P39060 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL18A1P39060 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
COL18A1P39060 AL135744.1-201ENST00000565098 629 ntBASIC23.09■■□□□ 1.29
COL18A1P39060 INO80E-210ENST00000567705 880 ntTSL 3 BASIC23.09■■□□□ 1.29
COL18A1P39060 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC23.09■■□□□ 1.29
COL18A1P39060 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC23.09■■□□□ 1.29
COL18A1P39060 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
COL18A1P39060 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC23.09■■□□□ 1.29
COL18A1P39060 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL18A1P39060 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL18A1P39060 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
COL18A1P39060 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL18A1P39060 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms