Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
CIITAP33076 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.9■□□□□ 0.78
CIITAP33076 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.9■□□□□ 0.78
CIITAP33076 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
CIITAP33076 PRYP5-201ENST00000451909 266 ntBASIC19.9■□□□□ 0.78
CIITAP33076 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.9■□□□□ 0.78
CIITAP33076 NKAPP1-205ENST00000585790 367 ntBASIC19.9■□□□□ 0.78
CIITAP33076 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
CIITAP33076 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CIITAP33076 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.9■□□□□ 0.78
CIITAP33076 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.9■□□□□ 0.78
CIITAP33076 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.9■□□□□ 0.78
CIITAP33076 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.9■□□□□ 0.78
CIITAP33076 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.9■□□□□ 0.78
CIITAP33076 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CIITAP33076 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CIITAP33076 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.78
CIITAP33076 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CIITAP33076 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.89■□□□□ 0.77
CIITAP33076 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 AC003669.1-201ENST00000334569 611 ntBASIC19.89■□□□□ 0.77
CIITAP33076 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.89■□□□□ 0.77
CIITAP33076 FDX1P1-201ENST00000449115 551 ntBASIC19.89■□□□□ 0.77
CIITAP33076 SCARNA2-201ENST00000458748 420 ntBASIC19.89■□□□□ 0.77
CIITAP33076 HLA-J-201ENST00000462773 1622 ntBASIC19.89■□□□□ 0.77
CIITAP33076 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.89■□□□□ 0.77
CIITAP33076 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CIITAP33076 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.89■□□□□ 0.77
CIITAP33076 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.89■□□□□ 0.77
CIITAP33076 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CIITAP33076 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.89■□□□□ 0.77
CIITAP33076 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.89■□□□□ 0.77
CIITAP33076 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.89■□□□□ 0.77
CIITAP33076 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CIITAP33076 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CIITAP33076 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CIITAP33076 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CIITAP33076 AC133963.1-201ENST00000504166 1679 ntBASIC19.88■□□□□ 0.77
CIITAP33076 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CIITAP33076 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.88■□□□□ 0.77
CIITAP33076 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.88■□□□□ 0.77
CIITAP33076 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CIITAP33076 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.88■□□□□ 0.77
CIITAP33076 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 AC009078.2-202ENST00000463353 338 ntBASIC19.88■□□□□ 0.77
CIITAP33076 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.88■□□□□ 0.77
CIITAP33076 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.88■□□□□ 0.77
CIITAP33076 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.88■□□□□ 0.77
CIITAP33076 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CIITAP33076 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.88■□□□□ 0.77
CIITAP33076 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.88■□□□□ 0.77
CIITAP33076 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 AL355312.1-201ENST00000407115 2176 ntBASIC19.87■□□□□ 0.77
CIITAP33076 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms