Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.06■□□□□ 0.96
COL4A5P29400 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
COL4A5P29400 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.06■□□□□ 0.96
COL4A5P29400 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC21.06■□□□□ 0.96
COL4A5P29400 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.05■□□□□ 0.96
COL4A5P29400 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A5P29400 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.05■□□□□ 0.96
COL4A5P29400 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.05■□□□□ 0.96
COL4A5P29400 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.05■□□□□ 0.96
COL4A5P29400 RN7SL204P-201ENST00000582831 262 ntBASIC21.05■□□□□ 0.96
COL4A5P29400 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A5P29400 AC026120.1-201ENST00000611536 926 ntBASIC21.05■□□□□ 0.96
COL4A5P29400 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 CROCCP3-202ENST00000420820 1947 ntBASIC21.05■□□□□ 0.96
COL4A5P29400 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A5P29400 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
COL4A5P29400 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A5P29400 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.05■□□□□ 0.96
COL4A5P29400 AC107918.2-201ENST00000530817 355 ntBASIC21.05■□□□□ 0.96
COL4A5P29400 AC190387.1-201ENST00000551683 408 ntBASIC21.05■□□□□ 0.96
COL4A5P29400 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.05■□□□□ 0.96
COL4A5P29400 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.05■□□□□ 0.96
COL4A5P29400 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL4A5P29400 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
COL4A5P29400 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.04■□□□□ 0.96
COL4A5P29400 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A5P29400 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.04■□□□□ 0.96
COL4A5P29400 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 AC002558.1-201ENST00000488906 803 ntBASIC21.04■□□□□ 0.96
COL4A5P29400 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.04■□□□□ 0.96
COL4A5P29400 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.04■□□□□ 0.96
COL4A5P29400 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.04■□□□□ 0.96
COL4A5P29400 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A5P29400 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A5P29400 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
COL4A5P29400 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A5P29400 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
COL4A5P29400 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A5P29400 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A5P29400 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A5P29400 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.03■□□□□ 0.96
COL4A5P29400 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.03■□□□□ 0.96
COL4A5P29400 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.03■□□□□ 0.96
COL4A5P29400 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.03■□□□□ 0.96
COL4A5P29400 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.03■□□□□ 0.96
COL4A5P29400 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A5P29400 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.03■□□□□ 0.96
COL4A5P29400 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
COL4A5P29400 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A5P29400 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A5P29400 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A5P29400 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC21.03■□□□□ 0.96
COL4A5P29400 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC21.03■□□□□ 0.96
COL4A5P29400 AC093677.2-201ENST00000600169 1863 ntBASIC21.03■□□□□ 0.96
COL4A5P29400 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A5P29400 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A5P29400 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A5P29400 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
COL4A5P29400 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
COL4A5P29400 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
COL4A5P29400 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC21.02■□□□□ 0.96
COL4A5P29400 KRT18P32-201ENST00000424695 1287 ntBASIC21.02■□□□□ 0.96
COL4A5P29400 AC140658.5-201ENST00000438532 169 ntBASIC21.02■□□□□ 0.96
COL4A5P29400 AC069335.1-201ENST00000489972 472 ntBASIC21.02■□□□□ 0.96
COL4A5P29400 AC067863.1-201ENST00000494933 530 ntBASIC21.02■□□□□ 0.96
COL4A5P29400 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A5P29400 IGHV3-52-201ENST00000519770 353 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms