Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CSB-PGBD3P0DP91 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 CALY-203ENST00000368558 825 ntTSL 5 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 AP002414.1-201ENST00000391405 1147 ntBASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 IGHV3-52-201ENST00000519770 353 ntBASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 OR7E47P-204ENST00000575924 449 ntBASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CSB-PGBD3P0DP91 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CSB-PGBD3P0DP91 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
CSB-PGBD3P0DP91 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CSB-PGBD3P0DP91 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
CSB-PGBD3P0DP91 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC23.33■■□□□ 1.32
CSB-PGBD3P0DP91 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CSB-PGBD3P0DP91 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CSB-PGBD3P0DP91 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CSB-PGBD3P0DP91 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 NEK7-201ENST00000367383 586 ntTSL 2 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 RHOQP3-201ENST00000437982 621 ntBASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 ACTG1P14-201ENST00000446382 1122 ntBASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 AP000344.2-201ENST00000512987 629 ntBASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 AC004449.1-201ENST00000564240 433 ntBASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 AC023141.13-201ENST00000604991 943 ntBASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 AC091812.2-201ENST00000619081 385 ntBASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 AC007064.4-201ENST00000637740 555 ntBASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CSB-PGBD3P0DP91 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 AL139400.1-201ENST00000366220 510 ntBASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 LINC00982-205ENST00000420957 435 ntBASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 AL353135.1-201ENST00000606729 504 ntBASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 AL096828.2-201ENST00000567259 1965 ntBASIC23.31■■□□□ 1.32
CSB-PGBD3P0DP91 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 DDT-204ENST00000404092 805 ntTSL 3 BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 AC116407.2-201ENST00000613639 860 ntBASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CSB-PGBD3P0DP91 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms