Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SIX3O95343 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 HBZP1-201ENST00000354915 429 ntBASIC17.32■□□□□ 0.36
SIX3O95343 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.32■□□□□ 0.36
SIX3O95343 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.32■□□□□ 0.36
SIX3O95343 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX3O95343 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX3O95343 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX3O95343 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SIX3O95343 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
SIX3O95343 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SIX3O95343 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX3O95343 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SIX3O95343 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
SIX3O95343 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 AD000864.1-201ENST00000624076 2295 ntBASIC17.31■□□□□ 0.36
SIX3O95343 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX3O95343 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 RNF152P1-201ENST00000397754 604 ntBASIC17.31■□□□□ 0.36
SIX3O95343 AC211429.1-201ENST00000415277 523 ntBASIC17.31■□□□□ 0.36
SIX3O95343 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.31■□□□□ 0.36
SIX3O95343 AC112907.2-201ENST00000448639 330 ntBASIC17.31■□□□□ 0.36
SIX3O95343 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.31■□□□□ 0.36
SIX3O95343 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX3O95343 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.31■□□□□ 0.36
SIX3O95343 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.31■□□□□ 0.36
SIX3O95343 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.31■□□□□ 0.36
SIX3O95343 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.31■□□□□ 0.36
SIX3O95343 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.31■□□□□ 0.36
SIX3O95343 HYMAI.1-201ENST00000620949 238 ntBASIC17.31■□□□□ 0.36
SIX3O95343 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.31■□□□□ 0.36
SIX3O95343 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SIX3O95343 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SIX3O95343 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX3O95343 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.31■□□□□ 0.36
SIX3O95343 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX3O95343 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX3O95343 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX3O95343 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.3■□□□□ 0.36
SIX3O95343 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX3O95343 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
SIX3O95343 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.3■□□□□ 0.36
SIX3O95343 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SIX3O95343 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX3O95343 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX3O95343 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
SIX3O95343 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.3■□□□□ 0.36
SIX3O95343 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.3■□□□□ 0.36
SIX3O95343 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.3■□□□□ 0.36
SIX3O95343 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SIX3O95343 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX3O95343 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
SIX3O95343 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX3O95343 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX3O95343 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX3O95343 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX3O95343 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SIX3O95343 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX3O95343 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.3■□□□□ 0.36
SIX3O95343 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SIX3O95343 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX3O95343 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX3O95343 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SIX3O95343 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX3O95343 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX3O95343 AK4P3-201ENST00000418260 669 ntBASIC17.29■□□□□ 0.36
SIX3O95343 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX3O95343 MTCL1P1-201ENST00000446207 792 ntBASIC17.29■□□□□ 0.36
SIX3O95343 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX3O95343 AC068472.1-201ENST00000474589 881 ntBASIC17.29■□□□□ 0.36
SIX3O95343 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX3O95343 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX3O95343 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX3O95343 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 GPR32P1-201ENST00000601788 811 ntBASIC17.29■□□□□ 0.36
SIX3O95343 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX3O95343 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
SIX3O95343 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX3O95343 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms