Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VPS4BO75351 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VPS4BO75351 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.38■□□□□ 0.37
VPS4BO75351 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS4BO75351 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS4BO75351 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS4BO75351 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 AC083849.1-201ENST00000615227 514 ntBASIC17.38■□□□□ 0.37
VPS4BO75351 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
VPS4BO75351 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS4BO75351 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS4BO75351 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
VPS4BO75351 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.38■□□□□ 0.37
VPS4BO75351 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS4BO75351 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VPS4BO75351 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4BO75351 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4BO75351 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4BO75351 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
VPS4BO75351 STARP1-201ENST00000397973 869 ntBASIC17.37■□□□□ 0.37
VPS4BO75351 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
VPS4BO75351 AL845331.1-201ENST00000424978 1190 ntBASIC17.37■□□□□ 0.37
VPS4BO75351 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS4BO75351 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS4BO75351 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4BO75351 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS4BO75351 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS4BO75351 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
VPS4BO75351 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS4BO75351 AC092329.2-201ENST00000598402 547 ntBASIC17.37■□□□□ 0.37
VPS4BO75351 AC092119.3-201ENST00000612618 583 ntBASIC17.37■□□□□ 0.37
VPS4BO75351 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS4BO75351 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS4BO75351 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
VPS4BO75351 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS4BO75351 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS4BO75351 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VPS4BO75351 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VPS4BO75351 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 FDX1P1-201ENST00000449115 551 ntBASIC17.36■□□□□ 0.37
VPS4BO75351 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.36■□□□□ 0.37
VPS4BO75351 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS4BO75351 NEK4P2-201ENST00000580004 1012 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms