Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 BNIP3P18-201ENST00000593976 575 ntBASIC16.67■□□□□ 0.26
LDB3O75112 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.67■□□□□ 0.26
LDB3O75112 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 TP73-AS1-210ENST00000637775 1455 ntBASIC16.67■□□□□ 0.26
LDB3O75112 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
LDB3O75112 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.66■□□□□ 0.26
LDB3O75112 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LDB3O75112 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.66■□□□□ 0.26
LDB3O75112 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.66■□□□□ 0.26
LDB3O75112 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
LDB3O75112 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
LDB3O75112 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LDB3O75112 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.66■□□□□ 0.26
LDB3O75112 FOSL1P1-201ENST00000511041 816 ntBASIC16.66■□□□□ 0.26
LDB3O75112 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 AC009533.2-201ENST00000543664 586 ntBASIC16.66■□□□□ 0.26
LDB3O75112 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.66■□□□□ 0.26
LDB3O75112 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.66■□□□□ 0.26
LDB3O75112 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.66■□□□□ 0.26
LDB3O75112 AC012313.10-201ENST00000623509 926 ntBASIC16.66■□□□□ 0.26
LDB3O75112 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.66■□□□□ 0.26
LDB3O75112 REXO1L11P-201ENST00000620964 1927 ntBASIC16.66■□□□□ 0.26
LDB3O75112 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.66■□□□□ 0.26
LDB3O75112 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDB3O75112 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.65■□□□□ 0.26
LDB3O75112 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 BX276092.7-203ENST00000637198 1536 ntBASIC16.65■□□□□ 0.26
LDB3O75112 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LDB3O75112 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.65■□□□□ 0.26
LDB3O75112 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.65■□□□□ 0.26
LDB3O75112 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 NUS1P2-201ENST00000417358 873 ntBASIC16.65■□□□□ 0.26
LDB3O75112 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.65■□□□□ 0.26
LDB3O75112 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.65■□□□□ 0.26
LDB3O75112 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.65■□□□□ 0.26
LDB3O75112 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.65■□□□□ 0.26
LDB3O75112 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.65■□□□□ 0.26
LDB3O75112 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB3O75112 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LDB3O75112 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
LDB3O75112 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.64■□□□□ 0.26
LDB3O75112 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LDB3O75112 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
LDB3O75112 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LDB3O75112 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms