Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SDC3O75056 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.27■□□□□ 0.36
SDC3O75056 COX5BP2-201ENST00000392354 334 ntBASIC17.27■□□□□ 0.36
SDC3O75056 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.27■□□□□ 0.36
SDC3O75056 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.27■□□□□ 0.36
SDC3O75056 AC136632.2-201ENST00000512891 861 ntBASIC17.27■□□□□ 0.36
SDC3O75056 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.27■□□□□ 0.36
SDC3O75056 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
SDC3O75056 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.27■□□□□ 0.36
SDC3O75056 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.27■□□□□ 0.36
SDC3O75056 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.27■□□□□ 0.36
SDC3O75056 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.27■□□□□ 0.36
SDC3O75056 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.27■□□□□ 0.36
SDC3O75056 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.27■□□□□ 0.36
SDC3O75056 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.27■□□□□ 0.36
SDC3O75056 AC148477.5-201ENST00000625164 1645 ntBASIC17.27■□□□□ 0.36
SDC3O75056 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 SIGLEC16-201ENST00000599858 1437 ntBASIC17.27■□□□□ 0.35
SDC3O75056 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.27■□□□□ 0.35
SDC3O75056 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SDC3O75056 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.27■□□□□ 0.35
SDC3O75056 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
SDC3O75056 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDC3O75056 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SDC3O75056 AL020989.1-201ENST00000422979 469 ntBASIC17.26■□□□□ 0.35
SDC3O75056 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.26■□□□□ 0.35
SDC3O75056 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 DNAJB3-201ENST00000446806 729 ntBASIC17.26■□□□□ 0.35
SDC3O75056 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.26■□□□□ 0.35
SDC3O75056 DUTP2-201ENST00000519164 463 ntBASIC17.26■□□□□ 0.35
SDC3O75056 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.26■□□□□ 0.35
SDC3O75056 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.26■□□□□ 0.35
SDC3O75056 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 AC002347.1-201ENST00000569543 541 ntBASIC17.26■□□□□ 0.35
SDC3O75056 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.26■□□□□ 0.35
SDC3O75056 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.26■□□□□ 0.35
SDC3O75056 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
SDC3O75056 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 AC100803.2-201ENST00000562459 1963 ntBASIC17.26■□□□□ 0.35
SDC3O75056 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SDC3O75056 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDC3O75056 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 AC004408.2-201ENST00000623613 2777 ntBASIC17.25■□□□□ 0.35
SDC3O75056 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 WIZP1-201ENST00000531444 2299 ntBASIC17.25■□□□□ 0.35
SDC3O75056 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC3O75056 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SDC3O75056 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms