Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.12■□□□□ 0.17
SSX4O60224 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.12■□□□□ 0.17
SSX4O60224 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
SSX4O60224 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SSX4O60224 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SSX4O60224 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
SSX4O60224 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
SSX4O60224 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.12■□□□□ 0.17
SSX4O60224 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.11■□□□□ 0.17
SSX4O60224 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SSX4O60224 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.11■□□□□ 0.17
SSX4O60224 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
SSX4O60224 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
SSX4O60224 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 AP000523.1-201ENST00000398242 1049 ntBASIC16.11■□□□□ 0.17
SSX4O60224 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.11■□□□□ 0.17
SSX4O60224 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SSX4O60224 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.11■□□□□ 0.17
SSX4O60224 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.11■□□□□ 0.17
SSX4O60224 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SSX4O60224 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.11■□□□□ 0.17
SSX4O60224 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.11■□□□□ 0.17
SSX4O60224 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.11■□□□□ 0.17
SSX4O60224 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SSX4O60224 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.11■□□□□ 0.17
SSX4O60224 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
SSX4O60224 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.11■□□□□ 0.17
SSX4O60224 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.11■□□□□ 0.17
SSX4O60224 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SSX4O60224 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
SSX4O60224 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SSX4O60224 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.1■□□□□ 0.17
SSX4O60224 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 AL023806.1-201ENST00000603994 1649 ntBASIC16.1■□□□□ 0.17
SSX4O60224 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.1■□□□□ 0.17
SSX4O60224 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.1■□□□□ 0.17
SSX4O60224 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.1■□□□□ 0.17
SSX4O60224 AC009947.2-201ENST00000444014 672 ntBASIC16.1■□□□□ 0.17
SSX4O60224 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.1■□□□□ 0.17
SSX4O60224 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.1■□□□□ 0.17
SSX4O60224 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.1■□□□□ 0.17
SSX4O60224 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.1■□□□□ 0.17
SSX4O60224 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.1■□□□□ 0.17
SSX4O60224 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.1■□□□□ 0.17
SSX4O60224 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.1■□□□□ 0.17
SSX4O60224 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SSX4O60224 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.1■□□□□ 0.17
SSX4O60224 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
SSX4O60224 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SSX4O60224 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SSX4O60224 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SSX4O60224 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SSX4O60224 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SSX4O60224 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.09■□□□□ 0.17
SSX4O60224 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SSX4O60224 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms