Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.11■□□□□ 0.49
CBX4O00257 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.11■□□□□ 0.49
CBX4O00257 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.11■□□□□ 0.49
CBX4O00257 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.11■□□□□ 0.49
CBX4O00257 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
CBX4O00257 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.11■□□□□ 0.49
CBX4O00257 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CBX4O00257 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.11■□□□□ 0.49
CBX4O00257 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CBX4O00257 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.1■□□□□ 0.49
CBX4O00257 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CBX4O00257 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.1■□□□□ 0.49
CBX4O00257 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CBX4O00257 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CBX4O00257 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CBX4O00257 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.1■□□□□ 0.49
CBX4O00257 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.1■□□□□ 0.49
CBX4O00257 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.1■□□□□ 0.49
CBX4O00257 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.1■□□□□ 0.49
CBX4O00257 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.1■□□□□ 0.49
CBX4O00257 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.1■□□□□ 0.49
CBX4O00257 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
CBX4O00257 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.1■□□□□ 0.49
CBX4O00257 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CBX4O00257 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CBX4O00257 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CBX4O00257 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.1■□□□□ 0.49
CBX4O00257 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
CBX4O00257 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CBX4O00257 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.09■□□□□ 0.49
CBX4O00257 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.09■□□□□ 0.49
CBX4O00257 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CBX4O00257 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.09■□□□□ 0.49
CBX4O00257 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.09■□□□□ 0.49
CBX4O00257 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.09■□□□□ 0.49
CBX4O00257 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.09■□□□□ 0.49
CBX4O00257 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.09■□□□□ 0.49
CBX4O00257 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
CBX4O00257 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CBX4O00257 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.09■□□□□ 0.49
CBX4O00257 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.09■□□□□ 0.49
CBX4O00257 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.09■□□□□ 0.49
CBX4O00257 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CBX4O00257 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CBX4O00257 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CBX4O00257 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.08■□□□□ 0.49
CBX4O00257 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.08■□□□□ 0.49
CBX4O00257 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.08■□□□□ 0.49
CBX4O00257 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CBX4O00257 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CBX4O00257 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.08■□□□□ 0.49
CBX4O00257 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CBX4O00257 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CBX4O00257 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CBX4O00257 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CBX4O00257 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CBX4O00257 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.08■□□□□ 0.48
CBX4O00257 COX5BP2-201ENST00000392354 334 ntBASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms