Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 RBM17P3-201ENST00000417687 1192 ntBASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 AL031284.1-201ENST00000419297 478 ntBASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC008608.2-201ENST00000606089 416 ntBASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TMX2-CTNND1H3BSU7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC112777.1-201ENST00000540175 1423 ntBASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC132008.2-207ENST00000454517 770 ntBASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC083906.6-201ENST00000641366 219 ntBASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 IL9RP2-201ENST00000423948 1312 ntBASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.4■□□□□ 0.38
TMX2-CTNND1H3BSU7 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TMX2-CTNND1H3BSU7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
TMX2-CTNND1H3BSU7 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 RNPS1P1-201ENST00000507437 918 ntBASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC073648.2-201ENST00000510116 352 ntBASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC009154.2-201ENST00000621177 724 ntBASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TMX2-CTNND1H3BSU7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms