Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 KRT16P4-201ENST00000453883 522 ntBASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 EMBP1-201ENST00000458200 901 ntBASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A3BPQ9Y5P4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 FAAHP1-202ENST00000446499 1238 ntBASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.83■□□□□ 0.77
COL4A3BPQ9Y5P4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 KRT8P47-201ENST00000604727 1398 ntBASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.83■□□□□ 0.76
COL4A3BPQ9Y5P4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 LINC00896-202ENST00000609602 2128 ntBASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 AC012317.2-201ENST00000623305 2251 ntBASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 AC026396.1-201ENST00000419388 421 ntBASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 AL138831.2-201ENST00000606564 490 ntBASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 AC114341.1-201ENST00000618070 349 ntBASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 AC006116.8-202ENST00000587620 1550 ntBASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A3BPQ9Y5P4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A3BPQ9Y5P4 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A3BPQ9Y5P4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A3BPQ9Y5P4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
COL4A3BPQ9Y5P4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms