Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 VENTXP7-201ENST00000475503 772 ntBASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 AC091607.1-201ENST00000490318 1060 ntBASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 AP002414.4-201ENST00000589764 1148 ntBASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 LINC01451-201ENST00000623792 534 ntBASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 HLA-J-201ENST00000462773 1622 ntBASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 FZD10-202ENST00000539839 3282 ntBASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.39■□□□□ 0.54
AP4E1Q9UPM8 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
AP4E1Q9UPM8 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
AP4E1Q9UPM8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
AP4E1Q9UPM8 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
AP4E1Q9UPM8 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 TPSP2-201ENST00000561760 610 ntBASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 AP005901.3-202ENST00000581653 237 ntBASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 AL138831.2-201ENST00000606564 490 ntBASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
AP4E1Q9UPM8 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 AC007967.3-201ENST00000434308 558 ntBASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 DRAXINP1-201ENST00000437611 948 ntBASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 AC233702.3-201ENST00000578656 1387 ntBASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
AP4E1Q9UPM8 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 TOB2P1-201ENST00000469761 992 ntBASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms