Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF41Q9H4P4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
RNF41Q9H4P4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF41Q9H4P4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF41Q9H4P4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF41Q9H4P4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
RNF41Q9H4P4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 AC132008.2-207ENST00000454517 770 ntBASIC20.89■□□□□ 0.93
RNF41Q9H4P4 AC002558.1-201ENST00000488906 803 ntBASIC20.89■□□□□ 0.93
RNF41Q9H4P4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 LINC01451-201ENST00000623792 534 ntBASIC20.89■□□□□ 0.93
RNF41Q9H4P4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.89■□□□□ 0.93
RNF41Q9H4P4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 SIRPAP1-201ENST00000448467 1770 ntBASIC20.88■□□□□ 0.93
RNF41Q9H4P4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 ABCD1P5-201ENST00000445663 754 ntBASIC20.88■□□□□ 0.93
RNF41Q9H4P4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF41Q9H4P4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 REXO1L11P-201ENST00000620964 1927 ntBASIC20.87■□□□□ 0.93
RNF41Q9H4P4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 UNC93B7-201ENST00000509439 705 ntBASIC20.87■□□□□ 0.93
RNF41Q9H4P4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 AC019129.2-201ENST00000609837 1235 ntBASIC20.87■□□□□ 0.93
RNF41Q9H4P4 REXO1L6P-202ENST00000619970 1078 ntBASIC20.87■□□□□ 0.93
RNF41Q9H4P4 AD001527.2-201ENST00000622994 785 ntBASIC20.87■□□□□ 0.93
RNF41Q9H4P4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 AL049757.1-201ENST00000616842 1596 ntBASIC20.87■□□□□ 0.93
RNF41Q9H4P4 GNAS-203ENST00000306120 1878 ntBASIC20.87■□□□□ 0.93
RNF41Q9H4P4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF41Q9H4P4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms