Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
ERCC4Q92889 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC4Q92889 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC4Q92889 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ERCC4Q92889 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
ERCC4Q92889 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC4Q92889 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
ERCC4Q92889 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
ERCC4Q92889 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 HMGA1P5-201ENST00000412453 271 ntBASIC20.12■□□□□ 0.81
ERCC4Q92889 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC4Q92889 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC4Q92889 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.12■□□□□ 0.81
ERCC4Q92889 GCSHP2-201ENST00000560971 527 ntBASIC20.12■□□□□ 0.81
ERCC4Q92889 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
ERCC4Q92889 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ERCC4Q92889 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.12■□□□□ 0.81
ERCC4Q92889 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.12■□□□□ 0.81
ERCC4Q92889 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.12■□□□□ 0.81
ERCC4Q92889 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ERCC4Q92889 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.12■□□□□ 0.81
ERCC4Q92889 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.12■□□□□ 0.81
ERCC4Q92889 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.11■□□□□ 0.81
ERCC4Q92889 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.11■□□□□ 0.81
ERCC4Q92889 ECEL1P3-201ENST00000427961 737 ntBASIC20.11■□□□□ 0.81
ERCC4Q92889 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.11■□□□□ 0.81
ERCC4Q92889 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.11■□□□□ 0.81
ERCC4Q92889 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.11■□□□□ 0.81
ERCC4Q92889 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.11■□□□□ 0.81
ERCC4Q92889 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.11■□□□□ 0.81
ERCC4Q92889 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
ERCC4Q92889 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
ERCC4Q92889 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.11■□□□□ 0.81
ERCC4Q92889 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
ERCC4Q92889 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.11■□□□□ 0.81
ERCC4Q92889 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
ERCC4Q92889 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC20.11■□□□□ 0.81
ERCC4Q92889 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ERCC4Q92889 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.1■□□□□ 0.81
ERCC4Q92889 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.1■□□□□ 0.81
ERCC4Q92889 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.1■□□□□ 0.81
ERCC4Q92889 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.1■□□□□ 0.81
ERCC4Q92889 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
ERCC4Q92889 PVRIG2P-201ENST00000435460 978 ntBASIC20.1■□□□□ 0.81
ERCC4Q92889 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.1■□□□□ 0.81
ERCC4Q92889 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
ERCC4Q92889 AC092865.7-201ENST00000641832 219 ntBASIC20.1■□□□□ 0.81
ERCC4Q92889 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
ERCC4Q92889 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.1■□□□□ 0.81
ERCC4Q92889 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ERCC4Q92889 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.1■□□□□ 0.81
ERCC4Q92889 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
ERCC4Q92889 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.09■□□□□ 0.81
ERCC4Q92889 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 LINC01568-207ENST00000641790 1380 ntBASIC20.09■□□□□ 0.81
ERCC4Q92889 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
ERCC4Q92889 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
ERCC4Q92889 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
ERCC4Q92889 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.09■□□□□ 0.81
ERCC4Q92889 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC4Q92889 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
ERCC4Q92889 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC4Q92889 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.09■□□□□ 0.81
ERCC4Q92889 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC4Q92889 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.09■□□□□ 0.81
ERCC4Q92889 AC079602.3-201ENST00000623931 403 ntBASIC20.09■□□□□ 0.81
ERCC4Q92889 AL023973.1-201ENST00000624619 620 ntBASIC20.09■□□□□ 0.81
ERCC4Q92889 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms