Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLHC1Q8NHS4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.05■□□□□ 0.32
CLHC1Q8NHS4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.05■□□□□ 0.32
CLHC1Q8NHS4 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLHC1Q8NHS4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLHC1Q8NHS4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLHC1Q8NHS4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CLHC1Q8NHS4 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLHC1Q8NHS4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 COX11P1-201ENST00000489116 835 ntBASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 AC113404.2-201ENST00000507884 177 ntBASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 AC004263.2-201ENST00000617183 678 ntBASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 REXO1L11P-201ENST00000620964 1927 ntBASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLHC1Q8NHS4 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 AC139887.4-201ENST00000607877 719 ntBASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 AC011558.1-201ENST00000623459 338 ntBASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.03■□□□□ 0.32
CLHC1Q8NHS4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 AC022211.2-201ENST00000585075 2527 ntBASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 AC092597.1-201ENST00000487352 616 ntBASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 AC116407.2-201ENST00000613639 860 ntBASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.02■□□□□ 0.32
CLHC1Q8NHS4 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLHC1Q8NHS4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
CLHC1Q8NHS4 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLHC1Q8NHS4 AP001094.4-201ENST00000579008 2176 ntBASIC17.02■□□□□ 0.31
CLHC1Q8NHS4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms