Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
CLRN3Q8NCR9 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DUX4L2-201ENST00000561772 1275 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 CCDC92B-201ENST00000575506 885 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DUX4L6-201ENST00000626483 1275 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DUX4L1-201ENST00000627662 1275 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DUX4L8-201ENST00000629013 1275 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DUX4L3-201ENST00000630187 1275 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DUX4L7-201ENST00000630678 1275 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DUX4L5-201ENST00000630834 1275 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 KRT8P8-201ENST00000434750 1448 ntBASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CLRN3Q8NCR9 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 GAS2L1P2-201ENST00000436355 1356 ntBASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 TSPY21P-201ENST00000433481 731 ntBASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 AC012414.1-201ENST00000556676 535 ntBASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms